| Laser | Fluorescent Channel | LSR II Channel Name | Commonly Used Fluorescent Dyes |
| 405nm Violet | 450/50 | BV421 | BV421, SuperBright 436, StarBright Violet 440, CF405S, V450, VioBlue, eFluor 450, Pacific Blue, Alexa Fluor 405, Spark Violet 423, Zombie Violet, DAPI, |
| 525/50 505 LP | BV510 | StarBright Violet 515, StarBright Violet 475, BV 480, BV 510, Pacific Green, Pacific Orange, Zombie Aqua, |
| 660/20 630 LP | BV650 | StarbBright 670, BV 650, SuperBright 645, Qdot 655 |
| 488nm Blue | 525/50 505 LP | FITC | FITC, Alexa Fluor 488, Brilliant Blue 515, Spark Blue 574, Vio515, Zombie Green |
| 695/40 685 LP | PerCP | StarBright Blue 700, Brilliant Blue 700, PerCP-eFluor 700, PerCP-Vio 700, PE-Fire 700, PerCP-Cy 5.5, PE-Cy5.5, PerCP |
| 561nm Yellow | 585/15 | PE | PE, CF555, Alexa Fluor 555, Spark YG 581 |
| 610/20 595 LP | PE-Texas Red | PE-CF594, PE-Dazzle 594, PE-Texas Red, ECD, PE-eFluor 610, Propidium Iodide, Zombie Red |
| 660/20 630 LP | PE-Cy5 | PE-Cy5, PE-Alexa 647, 7-AAD |
| 780/60 750 LP | PE-Cy7 | PE-Cy7, PE-Vio770,PE-Fire 840 |
| 640nm Red | 670/30 | APC | APC. Alexa Fluor 647, eFluor 660, APC-Cy5.5, Sytox Red, Ghost Dye Red 710, Live/Dead Fix Far Red |
| 780/60 750 LP | APC-Cy7 | APC-Alexa 750, APC-eFluor 780, APC-Vio770, APC-Fire 750, APC-Fire 810, APC-Cy7, Live/Dead Fix Near IR, Zombie NIR, Ghost Dye Red 780 |
