| Laser | Fluorescent Channel | Cytek Channel Names | Commonly Used Fluorescent Dyes |
| 355 nm | | UV1 | |
| | UV2 | BUV395 |
| | UV3 | |
| | UV4 | |
| | UV5 | |
| | UV6 | Alexa Fluor 350, DyLight 350 |
| | UV7 | BUV496 |
| | UV8 | |
| | UV9 | BUV563 |
| | UV10 | BUV615 |
| | UV11 | BUV661 |
| | UV12 | |
| | UV13 | |
| | UV14 | BUV737 |
| | UV15 | |
| | UV16 | BUV805 |
| | | |
| 405 nm | | V1 | BV421 |
| | V2 | Alexa Fluor 405, SuperBright 436, DyLight 405 |
| | V3 | Pacific Blue, CF405M, V450 ,violetFluor 450, VioBlue, eFluor 450 |
| | V4 | |
| | V5 | violetFluor 500, BV480 |
| | V6 | |
| | V7 | BV510, VioGreen,V500,eFluor 506 |
| | V8 | Pacific Orange, BV570, Spark Violet 538 |
| | V9 | |
| | V10 | BV605, SuperBright 600 |
| | V11 | Brilliant Violet 650, SuperBright 645 |
| | V12 | |
| | V13 | BV711, SuperBright 702 |
| | V14 | BV750 |
| | V15 | BV785,BV786, SuperBright 780 |
| | V16 | |
| | | |
| 488 nm | | B1 | CF488A,NovaFluor Blue 510 |
| | B2 | FITC, AlexaFluor 488 |
| | B3 | NovaFluor Blue 555, VioBright FITC, Spark Blue 550, NovaFluor 530, Alexa Fluor 532 |
| | B4 | |
| | B5 | NovaFluor Blue 585 |
| | B6 | NovaFluor Blue 610/70s |
| | B7 | NovaFluor Blue 660/120s |
| | B8 | PerCP |
| | B9 | Brilliant Blue 700, PerCP-Cy5.5 |
| | B10 | PerCP-eFluor 710, PerCP-Vio700 |
| | B11 | |
| | B12 | |
| | B13 | |
| | B14 | |
| | B15 | |
| | B16 | |
| | | |
| 561 nm | | YG1 | CF568,PE,DyLight 550, Alexa Fluor 555, CF555,NovaFluor Yellow 570, Spark YG 570, CF543 |
| | YG2 | NovaFluor Yellow 590, Spark YG 593 |
| | YG3 | PE-Texas Red, PE-CF594, PE-Dazzle 594, PE-Vio 615,PE-eFluor 610, NovaFluor Yellow 610 |
| | YG4 | NovaFluor Yellow 660, PE-Fire 640 |
| | YG5 | PE-Cy5 |
| | YG6 | NovaFluor Yellow 690 |
| | YG7 | NovaFluor 730, PE-Fire 700, PE-Cy5.5, NovaFluor Yellow 700 |
| | YG8 | |
| | YG9 | PE-Cy7, PE-Vio770 |
| | YG10 | |
| | | |
| 640 nm | | R1 | APC |
| | R2 | NovaFluor Red 660,Alexa Fluor 647, DyLight 650, CF640R,eFluor 660,Janelia Fluor 646,CF647,NovaFluor Blue 660 / 40S
|
| | R3 | NovaFluor Red 700, NovaFluor Red 685, APC-Cy5.5, AlexaFluor 660, Spark NIR 685
|
| | R4 | NovaFluor Red 710, Alexa Fluor 700, R718, Alexa Fluor 680, redFluor 710, APC-R700
|
| | R5 | |
| | R6 | |
| | R7 | APC-Cy7, APC-H7, APC-eFluor 780, APC-Fire 750, APC-Vio 770 |
| | R8 | APC-Fire 810 |
| | | |
