Equipment and Software

Mass spectrometry

  • Orbitrap Fusion Lumos/ETD mass spectrometer (Thermo Fisher)
  • LTQ Orbitrap Velos Pro H/ETD mass spectrometer (Thermo Fisher)
  • Q Exactive mass spectrometer (Thermo Fisher)
  • ESI-TOF mass spectrometer (Agilent model 6224)
  • RSLC NANO HPLC system (Dionex; 2 systems)
  • Ultimate 3000 HPLC system with diode array detector and fraction collector (Thermo Fisher)
  • 1260 Infinity binary pump HPLC system (Agilent)

Sample Preparation

  • Barocycler 2320EXT (Pressure BioSciences)

Data Processing

  • Mascot Distiller (Matrix Science; 2 licenses)
  • Scaffold 5 (Proteome Software; 2 licenses)
  • Scaffold DIA (Proteome Software)
  • Scaffold LFQ (Proteome Software)
  • Scaffold PTM (Proteome Software)
  • Scaffold Elements (Proteome Software)
  • GPMAW (Lighthouse Data)